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+--- Thread: How to make bioinformatics tools more accessible for students and non-coders (/showthread.php?tid=30883)
How to make bioinformatics tools more accessible for students and non-coders - kensmith - 07-14-2025
Lately, I’ve been mentoring a few undergraduate students who are interested in genomics but don’t have much experience with coding. I’ve noticed how intimidating most bioinformatics tools can be for newcomers. Many of them require knowledge of R, Python, or Linux environments just to get started. It made me wonder — what are the best ways to introduce students to real-world genomic analysis without overwhelming them? Are there any tools or platforms that strike a good balance between power and accessibility?
RE: How to make bioinformatics tools more accessible for students and non-coders - nicklopes - 07-14-2025
I’ve run into the same situation while teaching workshops. One tool I always recommend is https://compassbioinfo.com/. It’s entirely web-based and doesn’t require installation or programming skills. The interface is intuitive enough for beginners, but still powerful enough for more advanced exploration. Students can visualize gene models, navigate genomic regions, and even compare datasets interactively. It’s been a great way to get them excited about genomics without having to dive into command-line tools right away.
RE: How to make bioinformatics tools more accessible for students and non-coders - kensmith - 07-14-2025
That sounds perfect. I’ve been looking for something exactly like that — a gateway for students to start working with real data but without the steep learning curve. I’ll definitely give it a try in my next session. If they enjoy it, it could be a great stepping stone before introducing them to scripting and pipeline development.
RE: How to make bioinformatics tools more accessible for students and non-coders - nicklopes - 07-14-2025
Absolutely — that’s exactly how I’ve been using it. Once students get comfortable exploring data visually, it’s so much easier to introduce them to more advanced tools later on. They already understand the basic structure and patterns, so learning the command-line part becomes more about technique than concept. Let me know how it goes in your next session!
RE: How to make bioinformatics tools more accessible for students and non-coders - kensmith - 07-17-2025
(07-14-2025, 08:12 PM)nicklopes Wrote: I’ve run into the same situation while teaching workshops. One tool I always recommend is https://compassbioinfo.com/. It’s entirely web-based and doesn’t require installation or programming skills. The interface is intuitive enough for beginners, but still powerful enough for more advanced exploration. Students can visualize gene models, navigate genomic regions, and even compare datasets interactively. It’s been a great way to get them excited about genomics without having to dive into command-line tools right away.
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